In this thesis we deal with the problem of temporal logic robustness estimation. We present a dynamic programming algorithm for the robust estimation problem of Metric Temporal Logic (MTL) formulas regarding a finite trace of time stated sequence. This algorithm not only tests if the MTL specification is satisfied by the given input which is a finite system trajectory, but also quantifies to what extend does the sequence satisfies or violates the MTL specification. The implementation of the algorithm is the DP-TALIRO toolbox for MATLAB. Currently it is used as the temporal logic robust computing engine of S-TALIRO which is a tool for MATLAB searching for trajectories of minimal robustness in Simulink/ Stateflow. DP-TALIRO is expected to have near linear running time and constant memory requirement depending on the structure of the MTL formula. DP-TALIRO toolbox also integrates new features not supported in its ancestor FW-TALIRO such as parameter replacement, most related iteration and most related predicate. A derivative of DP-TALIRO which is DP-T-TALIRO is also addressed in this thesis which applies dynamic programming algorithm for time robustness computation. We test the running time of DP-TALIRO and compare it with FW-TALIRO. Finally, we present an application where DP-TALIRO is used as the robustness computation core of S-TALIRO for a parameter estimation problem.

Rapid technology scaling, the main driver of the power and performance improvements of computing solutions, has also rendered our computing systems extremely susceptible to transient errors called soft errors. Among the arsenal of techniques to protect computation from soft errors, Control Flow Checking (CFC) based techniques have gained a reputation of effective, yet low-cost protection mechanism. The basic idea is that, there is a high probability that a soft-fault in program execution will eventually alter the control flow of the program. Therefore just by making sure that the control flow of the program is correct, significant protection can be achieved. More than a dozen techniques for CFC have been developed over the last several decades, ranging from hardware techniques, software techniques, and hardware-software hybrid techniques as well. Our analysis shows that existing CFC techniques are not only ineffective in protecting from soft errors, but cause additional power and performance overheads. For this analysis, we develop and validate a simulation based experimental setup to accurately and quantitatively estimate the architectural vulnerability of a program execution on a processor micro-architecture. We model the protection achieved by various state-of-the-art CFC techniques in this quantitative vulnerability estimation setup, and find out that software only CFC protection schemes (CFCSS, CFCSS+NA, CEDA) increase system vulnerability by 18% to 21% with 17% to 38% performance overhead. Hybrid CFC protection (CFEDC) increases vulnerability by 5%, while the vulnerability remains almost the same for hardware only CFC protection (CFCET); notwithstanding the hardware overheads of design cost, area, and power incurred in the hardware modifications required for their implementations.

In recent years, we have observed the prevalence of stream applications in many embedded domains. Stream programs distinguish themselves from traditional sequential programming languages through well defined independent actors, explicit data communication, and stable code/data access patterns. In order to achieve high performance and low power, scratch pad memory (SPM) has been introduced in today's embedded multicore processors. Current design frameworks for developing stream applications on SPM enhanced embedded architectures typically do not include a compiler that can perform automatic partitioning, mapping and scheduling under limited on-chip SPM capacities and memory access delays. Consequently, many designs are implemented manually, which leads to lengthy tasks and inferior designs. In this work, optimization techniques that automatically compile stream programs onto embedded multi-core architectures are proposed. As an initial case study, we implemented an automatic target recognition (ATR) algorithm on the IBM Cell Broadband Engine (BE). Then integer linear programming (ILP) and heuristic approaches were proposed to schedule stream programs on a single core embedded processor that has an SPM with code overlay. Later, ILP and heuristic approaches for Compiling Stream programs on SPM enhanced Multicore Processors (CSMP) were studied. The proposed CSMP ILP and heuristic approaches do not optimize for cycles in stream applications. Further, the number of software pipeline stages in the implementation is dependent on actor to processing engine (PE) mapping and is uncontrollable. We next presented a Retiming technique for Throughput optimization on Embedded Multi-core processors (RTEM). RTEM approach inherently handles cycles and can accept an upper bound on the number of software pipeline stages to be generated. We further enhanced RTEM by incorporating unrolling (URSTEM) that preserves all the beneficial properties of RTEM heuristic and also scales with the number of PEs through unrolling.

Threshold logic has been studied by at least two independent group of researchers. One group of researchers studied threshold logic with the intention of building threshold logic circuits. The earliest research to this end was done in the 1960's. The major work at that time focused on studying mathematical properties of threshold logic as no efficient circuit implementations of threshold logic were available. Recently many post-CMOS (Complimentary Metal Oxide Semiconductor) technologies that implement threshold logic have been proposed along with efficient CMOS implementations. This has renewed the effort to develop efficient threshold logic design automation techniques. This work contributes to this ongoing effort. Another group studying threshold logic did so, because the building block of neural networks - the Perceptron, is identical to the threshold element implementing a threshold function. Neural networks are used for various purposes as data classifiers. This work contributes tangentially to this field by proposing new methods and techniques to study and analyze functions implemented by a Perceptron After completion of the Human Genome Project, it has become evident that most biological phenomenon is not caused by the action of single genes, but due to the complex interaction involving a system of genes. In recent times, the `systems approach' for the study of gene systems is gaining popularity. Many different theories from mathematics and computer science has been used for this purpose. Among the systems approaches, the Boolean logic gene model has emerged as the current most popular discrete gene model. This work proposes a new gene model based on threshold logic functions (which are a subset of Boolean logic functions). The biological relevance and utility of this model is argued illustrated by using it to model different in-vivo as well as in-silico gene systems.

Thanks to continuous technology scaling, intelligent, fast and smaller digital systems are now available at affordable costs. As a result, digital systems have found use in a wide range of application areas that were not even imagined before, including medical (e.g., MRI, remote or post-operative monitoring devices, etc.), automotive (e.g., adaptive cruise control, anti-lock brakes, etc.), security systems (e.g., residential security gateways, surveillance devices, etc.), and in- and out-of-body sensing (e.g., capsule swallowed by patients measuring digestive system pH, heart monitors, etc.). Such computing systems, which are completely embedded within the application, are called embedded systems, as opposed to general purpose computing systems. In the design of such embedded systems, power consumption and reliability are indispensable system requirements. In battery operated portable devices, the battery is the single largest factor contributing to device cost, weight, recharging time, frequency and ultimately its usability. For example, in the Apple iPhone 4 smart-phone, the battery is $40\%$ of the device weight, occupies $36\%$ of its volume and allows only $7$ hours (over 3G) of talk time. As embedded systems find use in a range of sensitive applications, from bio-medical applications to safety and security systems, the reliability of the computations performed becomes a crucial factor. At our current technology-node, portable embedded systems are prone to expect failures due to soft errors at the rate of once-per-year; but with aggressive technology scaling, the rate is predicted to increase exponentially to once-per-hour. Over the years, researchers have been successful in developing techniques, implemented at different layers of the design-spectrum, to improve system power efficiency and reliability. Among the layers of design abstraction, I observe that the interface between the compiler and processor micro-architecture possesses a unique potential for efficient design optimizations. A compiler designer is able to observe and analyze the application software at a finer granularity; while the processor architect analyzes the system output (power, performance, etc.) for each executed instruction. At the compiler micro-architecture interface, if the system knowledge at the two design layers can be integrated, design optimizations at the two layers can be modified to efficiently utilize available resources and thereby achieve appreciable system-level benefits. To this effect, the thesis statement is that, ``by merging system design information at the compiler and micro-architecture design layers, smart compilers can be developed, that achieve reliable and power-efficient embedded computing through: i) Pure compiler techniques, ii) Hybrid compiler micro-architecture techniques, and iii) Compiler-aware architectures''. In this dissertation demonstrates, through contributions in each of the three compiler-based techniques, the effectiveness of smart compilers in achieving power-efficiency and reliability in embedded systems.

Limited Local Memory (LLM) multicore architectures are promising powerefficient architectures will scalable memory hierarchy. In LLM multicores, each core can access only a small local memory. Accesses to a large shared global memory can only be made explicitly through Direct Memory Access (DMA) operations. Standard Template Library (STL) is a powerful programming tool and is widely used for software development. STLs provide dynamic data structures, algorithms, and iterators for vector, deque (double-ended queue), list, map (red-black tree), etc. Since the size of the local memory is limited in the cores of the LLM architecture, and data transfer is not automatically supported by hardware cache or OS, the usage of current STL implementation on LLM multicores is limited. Specifically, there is a hard limitation on the amount of data they can handle. In this article, we propose and implement a framework which manages the STL container classes on the local memory of LLM multicore architecture. Our proposal removes the data size limitation of the STL, and therefore improves the programmability on LLM multicore architectures with little change to the original program. Our implementation results in only about 12%-17% increase in static library code size and reasonable runtime overheads.

Network-on-Chip (NoC) architectures have emerged as the solution to the on-chip communication challenges of multi-core embedded processor architectures. Design space exploration and performance evaluation of a NoC design requires fast simulation infrastructure. Simulation of register transfer level model of NoC is too slow for any meaningful design space exploration. One of the solutions to reduce the speed of simulation is to increase the level of abstraction. SystemC TLM2.0 provides the capability to model hardware design at higher levels of abstraction with trade-off of simulation speed and accuracy. In this thesis, SystemC TLM2.0 models of NoC routers are developed at three levels of abstraction namely loosely-timed, approximately-timed, and cycle accurate. Simulation speed and accuracy of these three models are evaluated by a case study of a 4x4 mesh NoC.

The use of energy-harvesting in a wireless sensor network (WSN) is essential for situations where it is either difficult or not cost effective to access the network's nodes to replace the batteries. In this paper, the problems involved in controlling an active sensor network that is powered both by batteries and solar energy are investigated. The objective is to develop control strategies to maximize the quality of coverage (QoC), which is defined as the minimum number of targets that must be covered and reported over a 24 hour period. Assuming a time varying solar profile, the problem is to optimally control the sensing range of each sensor so as to maximize the QoC while maintaining connectivity throughout the network. Implicit in the solution is the dynamic allocation of solar energy during the day to sensing and to recharging the battery so that a minimum coverage is guaranteed even during the night, when only the batteries can supply energy to the sensors. This problem turns out to be a non-linear optimal control problem of high complexity. Based on novel and useful observations, a method is presented to solve it as a series of quasiconvex (unimodal) optimization problems which not only ensures a maximum QoC, but also maintains connectivity throughout the network. The runtime of the proposed solution is 60X less than a naive but optimal method which is based on dynamic programming, while the peak error of the solution is less than 8%. Unlike the dynamic programming method, the proposed method is scalable to large networks consisting of hundreds of sensors and targets. The solution method enables a designer to explore the optimal configuration of network design. This paper offers many insights in the design of energy-harvesting networks, which result in minimum network setup cost through determination of optimal configuration of number of sensors, sensing beam width, and the sampling time.

Performance improvements have largely followed Moore's Law due to the help from technology scaling. In order to continue improving performance, power-efficiency must be reduced. Better technology has improved power-efficiency, but this has a limit. Multi-core architectures have been shown to be an additional aid to this crusade of increased power-efficiency. Accelerators are growing in popularity as the next means of achieving power-efficient performance. Accelerators such as Intel SSE are ideal, but prove difficult to program. FPGAs, on the other hand, are less efficient due to their fine-grained reconfigurability. A middle ground is found in CGRAs, which are highly power-efficient, but largely programmable accelerators. Power-efficiencies of 100s of GOPs/W have been estimated, more than 2 orders of magnitude greater than current processors. Currently, CGRAs are limited in their applicability due to their ability to only accelerate a single thread at a time. This limitation becomes especially apparent as multi-core/multi-threaded processors have moved into the mainstream. This limitation is removed by enabling multi-threading on CGRAs through a software-oriented approach. The key capability in this solution is enabling quick run-time transformation of schedules to execute on targeted portions of the CGRA. This allows the CGRA to be shared among multiple threads simultaneously. Analysis shows that enabling multi-threading has very small costs but provides very large benefits (less than 1% single-threaded performance loss but nearly 300% CGRA throughput increase). By increasing dynamism of CGRA scheduling, system performance is shown to increase overall system performance of an optimized system by almost 350% over that of a single-threaded CGRA and nearly 20x faster than the same system with no CGRA in a highly threaded environment.

Ever reducing time to market, along with short product lifetimes, has created a need to shorten the microprocessor design time. Verification of the design and its analysis are two major components of this design cycle. Design validation techniques can be broadly classified into two major categories: simulation based approaches and formal techniques. Simulation based microprocessor validation involves running millions of cycles using random or pseudo random tests and allows verification of the register transfer level (RTL) model against an architectural model, i.e., that the processor executes instructions as required. The validation effort involves model checking to a high level description or simulation of the design against the RTL implementation. Formal techniques exhaustively analyze parts of the design but, do not verify RTL against the architecture specification. The focus of this work is to implement a fully automated validation environment for a MIPS based radiation hardened microprocessor using simulation based approaches. The basic framework uses the classical validation approach in which the design to be validated is described in a Hardware Definition Language (HDL) such as VHDL or Verilog. To implement a simulation based approach a number of random or pseudo random tests are generated. The output of the HDL based design is compared against the one obtained from a "perfect" model implementing similar functionality, a mismatch in the results would thus indicate a bug in the HDL based design. Effort is made to design the environment in such a manner that it can support validation during different stages of the design cycle. The validation environment includes appropriate changes so as to support architecture changes which are introduced because of radiation hardening. The manner in which the validation environment is build is highly dependent on the specifications of the perfect model used for comparisons. This work implements the validation environment for two MIPS simulators as the reference model. Two bugs have been discovered in the RTL model, using simulation based approaches through the validation environment.