Zebrafish models of Okur-Chung Neurodevelopmental Syndrome: Exploring Genotype-Phenotype Relationships

Description

Okur-Chung Neurodevelopmental syndrome (OCNDS) is a rare disorder characterized by hypotonia, developmental delay, dysmorphic features, and more. It is caused by pathogenic variants on CSNK2A1, the α subunit of protein kinase CK2. CK2 is considered a master regulator involved in

Okur-Chung Neurodevelopmental syndrome (OCNDS) is a rare disorder characterized by hypotonia, developmental delay, dysmorphic features, and more. It is caused by pathogenic variants on CSNK2A1, the α subunit of protein kinase CK2. CK2 is considered a master regulator involved in many cell functions from cell differentiation and proliferation to apoptosis. Here, we create a potential zebrafish model of OCNDS with CK2 inhibition and characterize fibroblast cells with, K198R, D156E, and R47G variants of CSNK2A1. RNAseq results display a wide range of effects notably in the Myosin Protein superfamily, Insulin-like Growth Factor family, and in proteins related to mitochondrial function and cell metabolism. Factors in cell growth and metabolism across the nervous system and neuromuscular interactions appear to be most affected with similarities in markers to oncogenic states in some cases.

Date Created
2023-05
Agent

Examining the Evolution, Effectiveness, and Applicability of the Adverse Childhood Experience Study

Description

Understanding and predicting health outcomes of adults by examining adverse childhood experiences (ACE) is one tool available to healthcare professionals. This tool originated from the 1988 ACE study, and because of its findings, it has been widely implemented and utilized.

Understanding and predicting health outcomes of adults by examining adverse childhood experiences (ACE) is one tool available to healthcare professionals. This tool originated from the 1988 ACE study, and because of its findings, it has been widely implemented and utilized. This literature review investigates how practical and applicable those findings are to validate its current widespread practice. It is concluded that the original study is not comprehensive enough to justify its use in a significant way; however, this review discusses how it can be built upon and modernized to capture more demographics, validate its results to apply to more populations, and become a better predictive model.

Date Created
2023-05
Agent

Investigation of Synthesis of Beta-Cyclodextrin into an Anti-Viral Platform

Description
Cyclodextrins are known for their pharmaceutical applications in a range of pathologies. Beta(ꞵ)-cyclodextrins have been suggested to be effective scaffolds that can ligate to peptides when chemically modified, which has the potential to be cost-effective in comparison to other

Cyclodextrins are known for their pharmaceutical applications in a range of pathologies. Beta(ꞵ)-cyclodextrins have been suggested to be effective scaffolds that can ligate to peptides when chemically modified, which has the potential to be cost-effective in comparison to other available treatments for antiviral therapeutics. It is hypothesized that a ꞵ-cyclodextrin platform can be modified through a few-step reaction process to develop a ꞵ-cyclodextrin-DBCO-GFP nanobody. The findings of this few-step reaction support the general approach of conjugating the ꞵ-cyclodextrin derivative to GPF nanobody for developing a cyclodextrin antiviral scaffold.
Date Created
2023-05
Agent

Allosteric Control of RNA Molecular Clamp through Mechanical Tension

Description

Molecular engineering is an emerging field that aims to create functional devices for modular purposes, particularly bottom-up design of nano-assemblies using mechanical and chemical methods to perform complex tasks. In this study, we present a novel method for constructing an

Molecular engineering is an emerging field that aims to create functional devices for modular purposes, particularly bottom-up design of nano-assemblies using mechanical and chemical methods to perform complex tasks. In this study, we present a novel method for constructing an RNA clamp using circularized RNA and a broccoli aptamer for fluorescence sensing. By designing a circular RNA with the broccoli aptamer and a complementary DNA strand, we created a molecular clamp that can stabilize the aptamer. The broccoli aptamer displays enhanced fluorescence when bound to its ligand, DFHBI-1T. Upon induction with this small molecule, the clamp can exhibit or destroy fluorescence. We demonstrated that we could control the fluorescence of the RNA clamp by introducing different complementary DNA strands, which regulate the level of fluorescence. Additionally, we designed allosteric control by introducing new DNA strands, making the system reversible. We explored the use of mechanical tension to regulate RNA function by attaching a spring-like activity through the RNA clamp to two points on the RNA surface. By adjusting the stiffness of the spring, we could control the tension between the two points and induce reversible conformational changes, effectively turning RNA function on and off. Our approach offers a simple and versatile method for creating RNA clamps with various applications, including RNA detection, regulation, and future nanodevice design. Our findings highlight the crucial role of mechanical forces in regulating RNA function, paving the way for developing new strategies for RNA manipulation, and potentially advancing molecular engineering. Although the current work is ongoing, we provide current progress of both theoretical and experimental calculations based on our findings.

Date Created
2023-05
Agent

Evaluation of a Novel Citizen Scientist Library Loan Program: A Community-Based Indoor Air Quality Initiative

Description

The COVID-19 pandemic has renewed interest in the importance of indoor air quality for health. The spread of respiratory aerosols is the primary mechanism for COVID-19 transmission, making it crucial to understand the role of effective ventilation in managing the

The COVID-19 pandemic has renewed interest in the importance of indoor air quality for health. The spread of respiratory aerosols is the primary mechanism for COVID-19 transmission, making it crucial to understand the role of effective ventilation in managing the risk of disease transmission. The concentration of exhaled carbon dioxide (CO2) in indoor spaces can be used as a proxy measure of ventilation efficiency. Poor indoor air quality has been associated with a range of acute and chronic health problems, including respiratory issues, cardiovascular disease, and cancer. Poor air quality may also impair cognitive performance and productivity. Social and economic inequalities exacerbate the impact of indoor air quality issues, making it crucial to address these problems in an equitable manner. Public libraries have been identified as an effective intermediary for providing education and free air quality monitoring technology to communities, with the ultimate goal of promoting awareness and increasing access to tools to promote accountability for maintaining high indoor air quality standards. The primary objectives of this initiative are to: 1) develop a citizen science toolkit for assessing indoor air quality in public spaces and deploy the toolkit to public libraries in Arizona; and 2) to conduct a program evaluation to determine whether this kit can be effectively deployed through public libraries to promote citizen science efforts and engage community members in promoting healthier indoor air quality, identify areas where improvements can be made, and prepare the program to be scaled to a larger audience.

Date Created
2023-05
Agent

Responses to dominance behaviors impact the formation of a reproductive hierarchy in the
ponerine ant Harpegnathos saltator

Description

Although social hierarchies are commonly found all throughout nature, the underlying mechanisms of their formation are still ambiguous. Hierarchies form through a wide range of interactions between subordinate and dominant individuals, and the ponerine ant Harpegnathos saltator provides the perfect

Although social hierarchies are commonly found all throughout nature, the underlying mechanisms of their formation are still ambiguous. Hierarchies form through a wide range of interactions between subordinate and dominant individuals, and the ponerine ant Harpegnathos saltator provides the perfect model to explore such dominance behaviors. When the queen is absent or her fecundity levels drop below a certain threshold, H. saltator workers undergo a dominance tournament, in which several individuals emerge as gamergates, reproductive workers that are not queens. During this tournament, several characterizable dominance behaviors are exhibited (antennal dueling, dominance biting, and policing), which can be used to study the behavioral and social dynamics in the formation of a reproductive hierarchy. Colonies of 15, 30, 60, and 120 workers were created in duplicate, and their dominance tournaments were recorded to study how these interactions impact gamergate establishment. Rather than studying these behaviors as isolated incidents, responses to policing behaviors (timid, neutral, or aggressive) and their duration were recorded along with the frequency of dueling. Three groups were determined: dueling future gamergates (DFG), dueling future non-gamergates (DFNG) and non-dueling individuals (ND). DFNG received many more policing attacks and the duration of these interactions lasted much longer. DFG consistently exhibited the most dueling. Timid and neutral responses were more common than aggressive responses, perhaps due to energy conversation purposes. Peaks in dueling correspond to peaks in policing, highlighting the dynamic behavioral interactions necessary for the formation of a reproductive hierarchy.

Date Created
2023-05
Agent

The Usutu Virus Envelope: In silico analysis of viral amino acids in a zoonotic capsid protein

Description

An effort to experiment on the novel Usutu virus in pure in silico methods was made to determine conformational changes with non polar point mutations in the amino acid sequence. The first method consisted of creating a Python program to

An effort to experiment on the novel Usutu virus in pure in silico methods was made to determine conformational changes with non polar point mutations in the amino acid sequence. The first method consisted of creating a Python program to exhaustively identify codons, amino acids, and dinucleotide bridges & nonbridges, including viral characteristics defined by Mollentze in 2021. The second method consisted of creating point mutations to non polar amino acids in deemed key sites of the Usutu virus envelope protein and finding the RMSD from the original structure. This resulted in one of two outcomes - either the experiment showed that the Usutu virus envelope protein is highly resistant to point mutations or in silico methods are inconsistent and biased, leading to inaccuracy.

Date Created
2023-05
Agent

Analysis of Pay-As-You-Go (PAYGo) PV Solar Systems and The Future of End Of Life Management

Description

This paper outlines the issue of end-of-life management in small scale solar systems deployed generally in Sub-Saharan Africa, known as PAYGos (Pay-as-you-go). Research and interviews were conducted in order to determine the current state of the industry and plans in

This paper outlines the issue of end-of-life management in small scale solar systems deployed generally in Sub-Saharan Africa, known as PAYGos (Pay-as-you-go). Research and interviews were conducted in order to determine the current state of the industry and plans in terms of waste management. Considering the current capabilities and technology of PV recycling, the future of the industry was analyzed. It is important to provide the highest quality of service to the customer and minimize issues with environmental hazards. Therefore, it is recommended here that PAYGo companies create contracts with recycling companies before the issue of solar waste increases drastically.

Date Created
2023-05
Agent

The Health Effects of Pesticide Exposure on Latino Migrant Farmworker Youth’ Health:
A Literature Review

Description

Latino migrant youth (LMY) migrate to the United States (U.S.) with the hopes to find work to support their families in their countries of origin. However, their young age and precarious documentation status limit the kinds of jobs they can

Latino migrant youth (LMY) migrate to the United States (U.S.) with the hopes to find work to support their families in their countries of origin. However, their young age and precarious documentation status limit the kinds of jobs they can take on while living in the U.S. Although agriculture is one of the most hazardous industries in the U.S., LMY can be found performing agricultural work and confronting a myriad of risks such as physical injuries from machinery, mental health risks, and exposure to chemical hazards. This literature review tackles the concept of pesticide exposure among Latino migrant youth in U.S. agriculture.

Date Created
2023-05
Agent

CRISPR Cas13d Conjugated to a DNA ORIGAMI Barrel to inactivate cervical cancer caused by HPV.

Description

The purpose of this experiment is to deliver DNA origami barrels loaded with Cas13d-gRNA binary complexes to HPV-16 and HPV-18 cervical cancer lines to make the cancer mortal. The production of Cas 13d has proven successful with a concentration of

The purpose of this experiment is to deliver DNA origami barrels loaded with Cas13d-gRNA binary complexes to HPV-16 and HPV-18 cervical cancer lines to make the cancer mortal. The production of Cas 13d has proven successful with a concentration of ~ 1mg/mL, but the activity assay performed has not shown conclusive evidence of Cas13d and guide RNA binary complex formation or activity. Successful annealing of the DNA origami barrel has been quantified by an agarose gel, but further quantification by TEM is in progress. Overall, steady progress is being made towards the goal of targeting HPV16 E6/E7 pre-mRNA with CRISPR/Cas13d.

Date Created
2023-05
Agent