The potential of using bio-geo-chemical processes for applications in geotechnical engineering has been widely explored in order to overcome the limitation of traditional ground improvement techniques. Biomineralization via urea hydrolysis, referred to as Microbial or Enzymatic Induced Carbonate Precipitation (MICP/EICP), has been shown to increase soil strength by stimulating precipitation of calcium carbonate minerals, bonding soil particles and filling the pores. Microbial Induced Desaturation and Precipitation (MIDP) via denitrification has also been studied for its potential to stabilize soils through mineral precipitation, but also through production of biogas, which can mitigate earthquake induced liquefaction by desaturation of the soil. Empirical relationships have been established, which relate the amount of products of these biochemical processes to the engineering properties of treated soils. However, these engineering properties may vary significantly depending on the biomineral and biogas formation mechanism and distribution patterns at pore-scale. This research focused on the pore-scale characterization of biomineral and biogas formations in porous media.

The pore-scale characteristics of calcium carbonate precipitation via EICP and biogenic gas formation via MIDP were explored by visual observation in a transparent porous media using a microfluidic chip. For this purpose, an imaging system was designed and image processing algorithms were developed to analyze the experimental images and detect the nucleation and growth of precipitated minerals and formation and migration mechanisms of gas bubbles within the microfluidic chip. Statistical analysis was performed based on the processed images to assess the evolution of biomineral size distribution, the number of precipitated minerals and the porosity reduction in time. The resulting images from the biomineralization study were used in a numerical simulation to investigate the relation between the mineral distribution, porosity-permeability relationships and process efficiency. By comparing biogenic gas production with abiotic gas production experiments, it was found that the gas formation significantly affects the gas distribution and resulting degree of saturation. The experimental results and image analysis provide insight in the kinetics of the precipitation and gas formation processes and their resulting distribution and related engineering properties.

This report analyzed the dynamic response of a long, linear elastic concrete bridge subject to spatially varying ground displacements as well as consistent ground displacements. Specifically, the study investigated the bridge’s response to consistent ground displacements at all supports (U-NW), ground displacements with wave passage effects and no soil profile variability (U-WP), and ground displacements with both wave passage effects and soil profile variability (V-WP). Time-history ground displacements were taken from recordings of the Loma Prieta, Duzce, and Chuetsu earthquakes. The two horizontal components of each earthquake time-history displacement record were applied to the bridge supports in the transverse and longitudinal directions. It was found that considering wave passage effects without soil profile variability, as compared with consistent ground displacements, significantly reduced the peak total energy of the system, as well as decreasing the maximum relative longitudinal displacements. The maximum relative transverse displacements were not significantly changed in the same case. It was also found that including both wave passage effects and soil profile variability (V-WP) generally resulted in larger maximum transverse relative displacements, across all earthquake time-histories tested. Similarly, it was found that using consistent ground displacements (U-NW) generally resulted in larger maximum longitudinal relative displacements, as well as larger peak total energy values.

This dissertation critically evaluated methodologies and devices for assessing and protecting the health of human populations, with particular emphasis on groundwater remediation and the use of wastewater-based epidemiology (WBE) to inform population health. A meta-analysis and assessment of laboratory-scale treatability studies for removing chlorinated solvents from groundwater found that sediment microcosms operated as continuous-flow columns are preferable to batch bottles when seeking to emulate with high fidelity the complex conditions prevailing in the subsurface in contaminated aquifers (Chapter 2). Compared to monitoring at the field-scale, use of column microcosms also showed (i) improved chemical speciation, and (ii) qualitative predictability of field parameters (Chapter 3). Monitoring of glucocorticoid hormones in wastewater of a university campus showed (i) elevated stress levels particularly at the start of the semester, (ii) on weekdays relative to weekend days (p = 0.05) (161 ± 42 μg d-1 per person, 122 ± 54 μg d-1 per person; p ≤ 0.05), and (iii) a positive association between levels of stress hormones and nicotine (rs: 0.49) and caffeine (0.63) consumption in this student population (Chapter 4). Also, (i) alcohol consumption determined by WBE was in line with literature estimates for this young sub-population (11.3 ± 7.5 g d-1 per person vs. 10.1 ± 0.8 g d-1 per person), whereas caffeine and nicotine uses were below (114 ± 49 g d-1 per person, 178 ± 19 g d-1 per person; 627 ± 219 g d-1 per person, 927 ± 243 g d-1 per person). The introduction of a novel continuous in situ sampler to WBE brought noted benefits relative to traditional time-integrated sampling, including (i) a higher sample coverage (93% vs. 3%), (ii) an ability to captured short-term analyte pulses (e.g., heroin, fentanyl, norbuprenorphine, and methadone), and (iii) an overall higher mass capture for drugs of abuse like morphine, fentanyl, methamphetamine, amphetamine, and the opioid antagonist metabolite norbuprenorphine (p ≤ 0.01). Methods and devices developed in this work are poised to find applications in the remediation sector and in human health assessments.

With the growth of global population, the demand for sustainable infrastructure is significantly increasing. Substructures with appropriate materials are required to be built in or above soil that can support the massive volume of construction demand. However, increased structural requirements often require ground improvement to increase the soil capacity. Moreover, certain soils are prone to liquefaction during an earthquake, which results in significant structural damage and loss of lives. While various soil treatment methods have been developed in the past to improve the soil’s load carrying ability, most of these traditional treatment methods have been found either hazardous and may cause irreversible damage to natural environment, or too disruptive to use beneath or adjacent to existing structures. Thus, alternative techniques are required to provide a more natural and sustainable solution. Biomediated methods of strengthening soil through mineral precipitation, in particular through microbially induced carbonate precipitation (MICP), have recently emerged as a promising means of soil improvement. In MICP, the precipitation of carbonate (usually in the form of calcium carbonate) is mediated by microorganisms and the process is referred to as biomineralization. The precipitated carbonate coats soil particles, precipitates in the voids, and bridges between soil particles, thereby improving the mechanical properties (e.g., strength, stiffness, and dilatancy). Although it has been reported that the soil’s mechanical properties can be extensively enhanced through MICP, the micro-scale mechanisms that influence the macro-scale constitutive response remain to be clearly explained.

The utilization of alternative techniques such as MICP requires an in-depth understanding of the particle-scale contact mechanisms and the ability to predict the improvement in soil properties resulting from calcite precipitation. For this purpose, the discrete element method (DEM), which is extensively used to investigate granular materials, is adopted in this dissertation. Three-dimensional discrete element method (DEM) based numerical models are developed to simulate the response of bio-cemented sand under static and dynamic loading conditions and the micro-scale mechanisms of MICP are numerically investigated. Special focus is paid to the understanding of the particle scale mechanisms that are dominant in the common laboratory scale experiments including undrained and drained triaxial compression when calcite bridges are present in the soil, that enhances its load capacity. The mechanisms behind improvement of liquefaction resistance in cemented sands are also elucidated through the use of DEM. The thesis thus aims to provide the fundamental link that is important in ensuring proper material design for granular materials to enhance their mechanical performance.

The public has expressed a growing desire for more sustainable and green technologies to be implemented in society. Bio-cementation is a method of soil improvement that satisfies this demand for sustainable and green technology. Bio-cementation can be performed by using microbes or free enzymes which precipitate carbonate within the treated soil. These methods are referred to as microbial induced carbonate precipitation (MICP) and enzyme induced carbonate precipitation (EICP). The precipitation of carbonate is the formation of crystalline minerals that fill the void spaces within a body of soil.

This thesis investigates the application of EICP in a soil collected from the Arizona State University Polytechnic campus. The surficial soil in the region is known to be a clayey sand. Both EICP and MICP have their limitations in soils consisting of a significant percentage of fines. Fine-grained soils have a greater surface area which requires the precipitation of a greater amount of carbonate to increase the soil’s strength. EICP was chosen due to not requiring any living organisms during the application, having a faster reaction rate and size constraints.

To determine the effectiveness of EICP as a method of improving a soil with a significant amount of fines, multiple comparisons were made: 1) The soil’s strength was analyzed on its own, untreated; 2) The soil was treated with EICP to determine if bio-cementation can strengthen the soil; 3) The soil had sand added to reduce the fines content and was treated with EICP to determine how the fines percentage effects the strength of a soil when treated with EICP.

While the EICP treatment increased the strength of the soil by over 3-fold, the strength was still relatively low when compared to results of other case studies treating sandy soils. More research could be done with triaxial testing due to the samples of the Polytechnic soil’s strength coming from capillarity.

Expansive soils in the United States cause extensive damage to roadways, buildings, and various structures. There are several treatment or methods of mitigation for these expansive soils. These treatments can be physical or chemical treatments that serve to provide more suitable building qualities for foundations and roadways alike. The main issue with expansive soils, is the volumetric variations, which are known as swelling and consolidation. These behaviors of the soil are usually stabilized through the use of lime solution, Portland Cement Concrete, and a newer technology in chemical treatments, sodium silicate solutions. Although the various chemical treatments show benefits in certain areas, the most beneficial method for stabilization comes from the combination of the chemical treatments. Lime and Portland cement concrete are the most effective in terms of increasing compressive strength and reduction of swell potential. However, with the introduction of silicate into either treatment, the efficacy of the treatments increases by a large amount lending itself more as an additive for the former processes. Sodium silicate solution does not lend itself to effectively increase the compressive strength of expansive soils. The sodium silicate solution treatment needs extensive research and development to further improve the process. A proposed experiment plan has been recommended to develop trends of pH and temperature and its influence on the effectiveness of the treatment. Nonetheless, due to the high energy consumption of the other processes, sodium silicate solution may be a proper step in decreases the carbon footprint, that is currently being created by the synthesis of Portland Cement Concrete and lime.

Current practice and a new technology for mitigating fugitive dust on construction sites are compared on the basis of economic, environmental and social impacts for this assessment. Fugitive dust can have serious health impacts, such as repertory illnesses and valley fever, on affected persons and is regulated by the Environmental Protection Agency and enforced by state and local agencies. Current practice consists of either relatively continuous application of potable water, a valuable resource, or application of expensive polymers, however, water application is considered the best available technology (BAT). The new technology, developed by the Center of Bio-medicated and Bio-inspired Geotechnics at Arizona State University, consists of application of Enzyme-Induced Carbonate Precipitate (EICP) to create an erosion-resistant crust. This crust is considered a "one and done" solution, until it is disturbed, however will last longer and stay more effective than quickly evaporating water. Future work will need to include how much disturbance is required to disturb the crust until ineffective towards mitigating fugitive dust. Results of the comparison show that a single EICP treatment produces 37 times less pollutants, uses 41 times less water and is 1.14 times cheaper than using water treatment to mitigate fugitive dust on a 7 acre site for 2 weeks (14 days). 14 days is the threshold at where EICP treatment becomes less expensive than water application for the purpose of mitigating fugitive dust. The EICP treatment benefits include lowering global warming inducing emissions, providing better air quality, becoming more cost effective, staying constantly effective to mitigate fugitive dust, and saving potable water.

One of the most economical and viable methods of soil improvement is dynamic compaction. It is a simple process that uses the potential energy of a weight (8 tonne to 36 tonne) dropped from a height of about 1 m to 30 m, depending on the project requirement, on to the soil to be compacted hence densifying it. However, dynamic compaction can only be applied on soil deposits where the degree of saturation is low and the permeability of the soil mass is high to allow for good drainage. Using dynamic compaction on saturated soil is unsuitable because upon application of the energy, a part of the energy is transferred to the pore water. The technique also does not work very well on soils having a large content of fines because of the absence of good drainage. The current research aims to develop a new technology using biogenic gas production to desaturate saturated soils and extend the use of dynamic compaction as a ground improvement technique to saturated soils with higher fines content. To evaluate the feasibility of this technology an experimental program has been performed. Soil columns with varying soil types have been saturated with substrate solution, resulting in the formation of nitrogen gas and the change in soils volume and saturation have been recorded. Cyclic triaxial tests have been performed to evaluate the change in volume and saturation under elevated pressure conditions and evaluate the response of the desaturated soil specimens to dynamic loading. The experimental results showed that soil specimens treated with MIDP under low confinement conditions undergo substantial volume expansion. The amount of expansion is seen to be a factor of their pore size, which is directly related to their grain size. The smaller the grain size, smaller is the pore size and hence greater the volume expansion. Under higher confining pressure conditions, the expansion during gas formation is suppressed. However, no conclusive result about the effect of the desaturation of the soil using biogenic gas on its compactibility could be obtained from the cyclic triaxial tests.

This dissertation focuses on the application of urban metabolism metrology (UMM) to process streams of the natural and built water environment to gauge public health concerning exposure to carcinogenic N-nitrosamines and abuse of narcotics. A survey of sources of exposure to N-nitrosamines in the U.S. population identified contaminated food products (1,900 ± 380 ng/day) as important drivers of attributable cancer risk (Chapter 2). Freshwater sediments in the proximity of U.S. municipal wastewater treatment plants were shown for the first time to harbor carcinogenic N-nitrosamine congeners, including N-nitrosodibutylamine (0.2-3.3 ng/g dw), N-nitrosodiphenylamine (0.2-4.7 ng/g dw), and N-nitrosopyrrolidine (3.4-19.6 ng/g dw) were, with treated wastewater discharge representing one potential factor contributing to the observed contamination (p=0.42) (Chapter 3). Opioid abuse rates in two small midwestern communities were estimated through the application of wastewater-based epidemiology (WBE). Average concentrations of opioids (City 1; City 2) were highest for morphine (713 ± 38, 306 ± 29 ng/L) and varied by for the remainder of the screened analytes. Furthermore, concentrations of the powerful opioid fentanyl (1.7 ± 0.2, 1.0 ± 0.5 ng/L) in wastewater were reported for the first time in the literature for the U.S. (Chapter 4). To gauge narcotic consumption within college-aged adults the WBE process used in Chapter 4 was applied to wastewater collected from a large university in the Southwestern U.S. Estimated narcotics consumption, in units of mg/day/1,000 persons showed the following rank order: cocaine (470 ± 42), heroin (474 ± 32), amphetamine (302 ± 14) and methylphenidate (236 ± 28). Most parental drugs and their respective metabolites showed detection frequencies in campus wastewater of 80% or more, with the notable exception of fentanyl, norfentanyl, buprenorphine, and norbuprenorphine. Estimated consumption of all narcotics, aside from attention-deficit/hyperactivity disorder medication, were higher than values reported in previous U.S. WBE studies for U.S. campuses (Chapter 5). The analyses presented here have identified variation in narcotic consumption habits across different U.S. communities, which can be gauged through UMM. Application of these techniques should be implemented throughout U.S. communities to provide insight into ongoing substance abuse and health issues within a community.

Design and mitigation of infrastructure on expansive soils requires an understanding of unsaturated soil mechanics and consideration of two stress variables (net normal stress and matric suction). Although numerous breakthroughs have allowed geotechnical engineers to study expansive soil response to varying suction-based stress scenarios (i.e. partial wetting), such studies are not practical on typical projects due to the difficulties and duration needed for equilibration associated with the necessary laboratory testing. The current practice encompasses saturated “conventional” soil mechanics testing, with the implementation of numerous empirical correlations and approximations to obtain an estimate of true field response. However, it has been observed that full wetting rarely occurs in the field, leading to an over-conservatism within a given design when partial wetting conditions are ignored. Many researchers have sought to improve ways of estimation of soil heave/shrinkage through intense studies of the suction-based response of reconstituted clay soils. However, the natural behavior of an undisturbed clay soil sample tends to differ significantly from a remolded sample of the same material.

In this study, laboratory techniques for the determination of soil suction were evaluated, a methodology for determination of the in-situ matric suction of a soil specimen was explored, and the mechanical response to changes in matric suction of natural clay specimens were measured. Suction-controlled laboratory oedometer devices were used to impose partial wetting conditions, similar to those experienced in a natural setting. The undisturbed natural soils tested in the study were obtained from Denver, CO and San Antonio, TX.

Key differences between the soil water characteristic curves of the undisturbed specimen test compared to the conventional reconstituted specimen test are highlighted. The Perko et al. (2000) and the PTI (2008) methods for estimating the relationship between volume and changes in matric suction (i.e. suction compression index) were evaluated by comparison to the directly measured values. Lastly, the directly measured partial wetting swell strain was compared to the fully saturated, one-dimensional, oedometer test (ASTM D4546) and the Surrogate Path Method (Singhal, 2010) to evaluate the estimation of partial wetting heave.