The distribution and transport of mercury in the human body are poorly constrained. For instance, the long-term persistence and intra-individual distribution of mercury in bones from dental amalgams or environmental exposure have not been studied. A robust method validated for accuracy and precision specifically for mercury in human bones would facilitate studies of mercury in anthropological, forensic, and medical studies. I present a highly precise, accurate mercury concentration analytical method targeted to human bone samples. This method uses commercially commonly available and reliable instruments that are not limited to elemental Hg analysis. This method requires significantly lower sample amounts than existing methods because it has a much lower limit of detection compared to the best mercury analyzers on the market and other analytical methods. With the low limit of detection achieved, this mercury concentration protocol is an excellent fit for studies with a limited amount of samples for destructive analysis. I then use this method to analyze the mercury concentration distribution in modern skeletal collections provided by three U.S. anthropological research facilities. Mercury concentration and distribution were analyzed from 35 donors’ skeletons with 18 different skeletal elements (bones) per donor to evaluate both the intra-individual and inter-individual variation in mercury concentration. Considered factors include geological differences in decomposition sites and the presence of dental amalgam filling. Geological differences in decomposition sites did not statistically affect the mercury concentration in the donor’s skeleton. The presence of dental amalgam significantly affected the inter-individual and intra-individual mercury concentration variation in donors’ skeletal samples. Individuals who had dental amalgam had significantly higher mercury concentration in their skeleton compared to individuals who did not have dental amalgam (p-value <0.01). Mercury concentration in the mandible, occipital bone, patella, and proximal phalanx (foot) was significantly affected by the presence of dental amalgam.