Stress activates physiological systems within the body to protect oneself against the potential harmful effects of enduring long-term stress. Past studies have shown that structures involved in timing are implicated in a number of psychological disorders and further are sensitive to stress. In this experiment, Sprague Dawley rats are trained to perform a perspective timing task and are then exposed to twice-daily chronic variable stress for 21 days. Behavioral data are collected, followed by post-mortem tissue analysis of the PFC, hippocampus, and striatum. This study aims to examine the morphological changes in key brain regions such as the hippocampus that appear to be involved in interval timing. Additionally, this study aims to confirm that dendritic complexity in the hippocampus produces consistent data using a classic Sholl analysis versus using a virtual image-stacking software, Neurostackr. The results of this study demonstrate that the expected Gaussian graph produced from a classic Sholl analysis was produced from both a long-shaft and short-shaft neuron found in the hippocampus using the virtual technology. These findings verify that a virtual image-stacking software and Sholl analysis will suffice in place of the traditional method of hand traced neurons on a transparent sheet with concentric circles to count bifurcation points. This virtual method ultimately reduces cost, improves timeliness of data collection, and eliminates some of the subjectivity of human error.