Protein and gene circuit level synthetic bioengineering can require years to develop a single target. Phage assisted continuous evolution (PACE) is a powerful new tool for rapidly engineering new genes and proteins, but the method requires an automated cell culture system, making it inaccessible to non industrial research programs. Complex protein functions, like specific binding, require similarly dynamic PACE selection that can be alternatively induced or suppressed, with heat labile chemicals like tetracycline. Selection conditions must be controlled continuously over days, with adjustments made every few minutes. To make PACE experiments accessible to the broader community, we designed dedicated cell culture hardware and integrated optogenetically controlled plasmids. The low cost and open source platform allows a user to conduct PACE with continuous monitoring and precise control of evolution using light.

We describe a secondary analysis of an in vitro experiment that supports the capabilities of a relatively new imaging technique known as functional Magnetic Resonance Electrical Impedance Tomography (fMREIT) to detect conductivity changes in neural tissue caused by activity. Methods: Magnetic Resonance (MR) phase data of active Aplysia ganglia tissue in artificial seawater (ASW) were collected before and after exposure to an excitotoxin using two different imaging current strengths, and these data were then used to reconstruct conductivity changes throughout the tissue. Results: We found that increases in neural activity led to significant increases in imaged conductivity when using high imaging currents, but these differences in conductivity were not seen in regions that did not contain neural tissue nor in data where there were no differences in neural activity. Conclusion: We conclude that the analysis presented here supports fMREIT as a contrast technique capable of imaging neural activity in live tissue more directly than functional imaging methods such as BOLD fMRI.