Engineered Excitonic Complex Directed by Programmable DNA Architectures

Efficient light collection and utilization are highly needed for developing effective photonic devices and materials. Nature is the master of organizing photosynthetic pigments into a densely packed state without self-quenching and conducting efficient energy transfer in a directed manner via implementing sophisticated proteins as scaffolds. The natural light-harvesting complex inspires the design of artificial photonic systems by utilizing synthetic templates to control the spatial arrangement and energy landscape of photoactive components. The self-assembled DNA nanostructures are highly programmable and intrinsically addressable, which makes them excellent templates for the precise organization of chromophores with desired complexity as artificial light-harvesting systems and photonic nanodevices for efficient photon capture and excitation energy transport. This dissertation focuses on the fundamental understanding and rational engineering of a series of artificial excitonic systems using programmable DNA architectures as templates to direct the self-assembly of cyanine dye aggregates. First, the DNA-templated pseudoisocyanine (PIC) dye aggregates were systematically studied to explore the effect of sequence and length of DNA templates on their excitonic properties. The results revealed that the PIC dye aggregates enable energy transfer along a defined track. Next, the benzothiazole cyanine dye K21 was introduced to form dye aggregates on double-stranded DNA templates. The strong inter-molecular coupling and weak sequence dependency of the K21 aggregates make it possible to mediate the efficient directional energy transfer over a distance up to 30 nm. Finally, the DNA helix-bundle structures with extended size and complicated geometries were employed to organize K21 dye as the scalable, addressable, and programmable excitonic complexes conducting sub-micron-scale directional exciton transport and serving as robust and modular building blocks to construct higher-order excitonic architectures.