Image Recognition Software Reveals Potential for Detection of Hypolith Colonization in the Namib Desert

Drylands, though one of the largest biomes, are also one of the most understudied biomes on the planet. This leaves scientists with limited understanding of unique life forms that have adapted to live in these arid environments. One such life form is the hypolithic microbial community; these are autotrophic cyanobacteria colonies that can be found on the underside of translucent rocks in deserts. With the light that filters through the rock above them, the microbes can photosynthesize and fix carbon from the atmosphere into the soil. In this study I looked at hypolith-like rock distribution in the Namib Desert by using image recognition software. I trained a Mask R-CNN network to detect quartz rock in images from the Gobabeb site. When the method was analyzed using the entire data set, the distribution of rock sizes between the manual annotations and the network predictions was not similar. When evaluating rock sizes smaller than 0.56 cm2 the method showed statistical significance in support of being a promising data collection method. With more training and corrective effort on the network, this method shows promise to be an accurate and novel way to collect data efficiently in dryland research.